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1

Random matrices and complexity of spin glasses

Antonio Auffinger, Gérard Ben Arous, Jiří Černý

Journal:

Communications on Pure and Applied Mathematics

Year:

2012

Language:

english

File:

PDF, 505 KB

english, 2012

2

On the energy landscape of spherical spin glasses

Auffinger, Antonio, Chen, Wei-Kuo

Journal:

Advances in Mathematics

Year:

2018

Language:

english

File:

PDF, 543 KB

english, 2018

3

Halogen bonds in biological molecules

Auffinger, P., Hays, F. A., Westhof, E., Ho, P. S.

Journal:

Proceedings of the National Academy of Sciences

Year:

2004

Language:

english

File:

PDF, 539 KB

english, 2004

4

The SK Model Is Infinite Step Replica Symmetry Breaking at Zero Temperature

Auffinger, Antonio, Chen, WeiâKuo, Zeng, Qiang

Journal:

Communications on Pure and Applied Mathematics

Year:

2020

Language:

english

File:

PDF, 241 KB

english, 2020

5

Cell-Penetrating Peptide-Modified Gold Nanoparticles for the Delivery of Doxorubicin to Brain Metastatic Breast Cancer

Morshed, Ramin A., Muroski, Megan E., Dai, Qing, Wegscheid, Michelle L., Auffinger, Brenda, Yu, Dou, Han, Yu, Zhang, Lingjiao, Wu, Meijing, Cheng, Yu, Lesniak, Maciej S.

Journal:

Molecular Pharmaceutics

Year:

2016

Language:

english

File:

PDF, 8.28 MB

english, 2016

6

Topologies of Random Geometric Complexes on Riemannian Manifolds in the Thermodynamic Limit

Auffinger, Antonio, Lerario, Antonio, Lundberg, Erik

Journal:

International Mathematics Research Notices

Year:

2020

File:

PDF, 372 KB

2020

7

Blood-Brain Barrier Permeable Gold Nanoparticles: An Efficient Delivery Platform for Enhanced Malignant Glioma Therapy and Imaging

Cheng, Yu, Dai, Qing, Morshed, Ramin A., Fan, Xiaobing, Wegscheid, Michelle L., Wainwright, Derek A., Han, Yu, Zhang, Lingjiao, Auffinger, Brenda, Tobias, Alex L., Rincón, Esther, Thaci, Bart, Ahmed,

Journal:

Year:

2014

Language:

english

File:

PDF, 1.56 MB

english, 2014

8

Rate of convergence of the mean for sub-additive ergodic sequences

Auffinger, Antonio, Damron, Michael, Hanson, Jack

Journal:

Advances in Mathematics

Year:

2015

Language:

english

File:

PDF, 674 KB

english, 2015

9

Revisiting GNRA and UNCG folds: U-turns versus Z-turns in RNA hairpin loops

D'Ascenzo, Luigi, Leonarski, Filip, Vicens, Quentin, Auffinger, Pascal

Journal:

Year:

2017

Language:

english

File:

PDF, 1.14 MB

english, 2017

10

Adenosine Slows Migration of Dendritic Cells but Does Not Affect Other Aspects of Dendritic Cell Maturation

Hofer, Susanne, Ivarsson, Lennart, Stoitzner, Patrizia, Auffinger, Margit, Rainer, Christian, Romani, Nikolaus, Heufler, Christine

Journal:

The Journal of Investigative Dermatology

Year:

2003

Language:

english

File:

PDF, 318 KB

english, 2003

11

Water and ion binding around r(UpA)12and d(TpA)12Oligomers - comparison with RNA and DNA (CpG)12 duplexes

Pascal Auffinger, Eric Westhof

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 783 KB

english, 2001

12

Extreme eigenvalues of sparse, heavy tailed random matrices

Auffinger, Antonio, Tang, Si

Journal:

Stochastic Processes and their Applications

Year:

2016

Language:

english

File:

PDF, 332 KB

english, 2016

13

Constraining primordial black hole masses with the isotropic gamma ray background

Arbey, Alexandre, Auffinger, JÃ©rÃ©my, Silk, Joseph

Journal:

Physical Review D

Year:

2020

File:

PDF, 958 KB

2020

14

A simple test for evaluating the truncation effects in simulations of systems involving charged groups

Pascal Auffinger, David L. Beveridge

Journal:

Chemical Physics Letters

Year:

1995

Language:

english

File:

PDF, 232 KB

english, 1995

15

Nucleic acid solvation: from outside to insight

Pascal Auffinger, Yaser Hashem

Journal:

Current Opinion in Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.72 MB

english, 2007

16

Minimally Invasive Transforaminal Lumbar Interbody Fusion (TLIF) for Spondylolisthesis in 282 Patients: In Situ Arthrodesis versus Reduction

Scheer, Justin K., Auffinger, Brenda, Wong, Ricky H., Lam, Sandi K., Lawton, Cort D., Nixon, Alexander T., Dahdaleh, Nader S., Smith, Zachary A., Fessler, Richard G.

Journal:

World Neurosurgery

Year:

2015

Language:

english

File:

PDF, 3.66 MB

english, 2015

17

105 Stabilization effects induced by modified nucleotides in tRNA T-loop motifs

Sydow, Dominique, Leonarski, Filip, D’Ascenzo, Luigi, Auffinger, Pascal

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 498 KB

english, 2015

18

The Legendre Structure of the Parisi Formula

Auffinger, Antonio, Chen, Wei-Kuo

Journal:

Communications in Mathematical Physics

Year:

2016

Language:

english

File:

PDF, 517 KB

english, 2016

19

Parisi formula for the ground state energy in the mixed $p$-spin model

Auffinger, Antonio, Chen, Wei-Kuo

Journal:

The Annals of Probability

Year:

2017

Language:

english

File:

PDF, 153 KB

english, 2017

20

Comparison between patient and surgeon perception of degenerative spine disease outcomes—a prospective blinded database study

Ben Z. Roitberg, Bart Thaci, Brenda Auffinger, Laura Kaplan…

Journal:

Acta Neurochirurgica

Year:

2013

Language:

english

File:

PDF, 245 KB

english, 2013

21

On properties of Parisi measures

Auffinger, Antonio, Chen, Wei-Kuo

Journal:

Probability Theory and Related Fields

Year:

2015

Language:

english

File:

PDF, 400 KB

english, 2015

22

106 Ion-π interactions in biomolecular systems

D’Ascenzo, Luigi, Auffinger, Pascal

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 445 KB

english, 2015

23

La démarche émergence du Réseau national de vigilance et de prévention des pathologies professionnelles (rnv3p)

Le Barbier, Mélina, Bonneterre, Vincent, Auffinger, Sandrine, Bensefa-Collas, Lynda, Brunel, Serge, Charbotel, Barbara, Empereur-Bissonnet, Pascal, Esquirol, Yolande, Garnier, Robert, Lapostolle, Anna

Journal:

Archives des Maladies Professionnelles et de l'Environnement

Year:

2016

Language:

french

File:

PDF, 250 KB

french, 2016

24

[AIP Advances in biomolecular simulations - Obernai (France) (1991)] AIP Conference Proceedings - Quantitative Studies on Molecular Recognition: Free Energy Perturbation Simulations on M+/222 Cryptates in Water and in Methanol

Auffinger, P., Wipff, G.

Year:

1991

Language:

english

File:

PDF, 66 KB

english, 1991

25

Existence of Two-Step Replica Symmetry Breaking for the Spherical Mixed p-Spin Glass at Zero Temperature

Auffinger, Antonio, Zeng, Qiang

Journal:

Communications in Mathematical Physics

Year:

2018

Language:

english

File:

PDF, 561 KB

english, 2018

26

Short but weak! The ZâDNA loneâpairâ¦ÏÂ conundrum challenges standard carbon van der Waals radii

Kruse, Holger, Mrazikova, Klaudia, D'Ascenzo, Luigi, Sponer, Jiri, Auffinger, Pascal

Journal:

Angewandte Chemie International Edition

Year:

2020

File:

PDF, 1.40 MB

2020

27

Stellar signatures of inhomogeneous big bang nucleosynthesis

Arbey, Alexandre, Auffinger, JÃ©rÃ©my, Silk, Joseph

Journal:

Physical Review D

Year:

2020

File:

PDF, 707 KB

2020

28

H-bond stability in the tRNA(Asp) anticodon hairpin: 3 ns of multiple molecular dynamics simulations

Auffinger, P., Westhof, E.

Journal:

Biophysical Journal

Year:

1996

Language:

english

File:

PDF, 1.25 MB

english, 1996

29

Nanoparticle-Programmed Self-Destructive Neural Stem Cells for Glioblastoma Targeting and Therapy

Cheng, Yu, Morshed, Ramin, Cheng, Shih-Hsun, Tobias, Alex, Auffinger, Brenda, Wainwright, Derek A., Zhang, Lingjiao, Yunis, Catherine, Han, Yu, Chen, Chin-Tu, Lo, Leu-Wei, Aboody, Karen S., Ahmed, Ati

Journal:

Year:

2013

Language:

english

File:

PDF, 1.73 MB

english, 2013

30

Inhibition of MMP14 potentiates the therapeutic effect of temozolomide and radiation in gliomas

Ulasov, Ilya, Thaci, Bart, Sarvaiya, Purvaba, Yi, Ruiyang, Guo, Donna, Auffinger, Brenda, Pytel, Peter, Zhang, Lingjiao, Kim, Chung Kwon, Borovjagin, Anton, Dey, Mahua, Han, Yu, Baryshnikov, Anatoly Y

Journal:

Cancer Medicine

Year:

2013

Language:

english

File:

PDF, 1.83 MB

english, 2013

31

Depletion of myeloid-derived suppressor cells during interleukin-12 immunogene therapy does not confer a survival advantage in experimental malignant glioma

Thaci, B, Ahmed, A U, Ulasov, I V, Wainwright, D A, Nigam, P, Auffinger, B, Tobias, A L, Han, Y, Zhang, L, Moon, K-S, Lesniak, M S

Journal:

Cancer Gene Therapy

Year:

2014

Language:

english

File:

PDF, 623 KB

english, 2014

32

A comprehensive classification and nomenclature of carboxyl–carboxyl(ate) supramolecular motifs and related catemers: implications for biomolecular systems

D'Ascenzo, Luigi, Auffinger, Pascal

Journal:

Acta Crystallographica Section B Structural Science, Crystal Engineering and Materials

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

33

Measuring Surgical Outcomes in Subaxial Degenerative Cervical Spine Disease Patients

Auffinger, Brenda, Lam, Sandi, Shen, Jingjing, Roitberg, Ben Z.

Journal:

Year:

2014

Language:

english

File:

PDF, 629 KB

english, 2014

34

RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNAAsp anticodon hairpin

Pascal Auffinger, Eric Westhof

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 556 KB

english, 1997

35

Molecular Dynamics Simulations of the Anticodon Hairpin of tRNA Asp : Structuring Effects of C−H···O Hydrogen Bonds and of Long-Range Hydration Forces

Auffinger, Pascal, Louise-May, Shirley, Westhof, Eric

Journal:

Journal of the American Chemical Society

Year:

1996

Language:

english

File:

PDF, 232 KB

english, 1996

36

A short guide for molecular dynamics simulations of RNA systems

Yaser Hashem, Pascal Auffinger

Journal:

Year:

2009

Language:

english

File:

PDF, 256 KB

english, 2009

37

On Spin Distributions for Generic p-Spin Models

Auffinger, Antonio, Jagannath, Aukosh

Journal:

Journal of Statistical Physics

Year:

2018

Language:

english

File:

PDF, 492 KB

english, 2018

38

Evolution of primordial black hole spin due to Hawking radiation

Arbey, Alexandre, Auffinger, JÃ©rÃ©my, Silk, Joseph

Journal:

Monthly Notices of the Royal Astronomical Society

Year:

2020

File:

PDF, 496 KB

2020

39

The Mg2+ Binding Sites of the 5S rRNA Loop E Motif as Investigated by Molecular Dynamics Simulations

Pascal Auffinger, Lukasz Bielecki, Eric Westhof

Journal:

Chemistry & Biology

Year:

2003

Language:

english

File:

PDF, 830 KB

english, 2003

40

Multifunctional nanoparticles for brain tumor imaging and therapy

Cheng, Yu, Morshed, Ramin A., Auffinger, Brenda, Tobias, Alex L., Lesniak, Maciej S.

Journal:

Advanced Drug Delivery Reviews

Year:

2014

Language:

english

File:

PDF, 648 KB

english, 2014

41

SPIE Proceedings [SPIE SPIE Smart Structures and Materials + Nondestructive Evaluation and Health Monitoring - San Diego, California, USA (Sunday 7 March 2010)] Sensors and Smart Structures Technologies for Civil, Mechanical, and Aerospace Systems 2010 - Shape memory polymer (SMP) actuation technology

Auffinger, Frank, Tomizuka, Masayoshi, Fisher, Michael, Maddux, Michael

Year:

2010

Language:

english

File:

PDF, 12.82 MB

english, 2010

42

Symmetric K+ and Mg2+ Ion-binding Sites in the 5 S rRNA Loop E Inferred from Molecular Dynamics Simulations

Pascal Auffinger, Lukasz Bielecki, Eric Westhof

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 2.55 MB

english, 2004

43

Hydration of RNA Base Pairs

Auffinger, Pascal, Westhof, Eric

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1998

Language:

english

File:

PDF, 993 KB

english, 1998

44

Hydration of C?H groups in tRNA

Auffinger, Pascal, Louise-May, Shirley, Westhof, Eric

Journal:

Faraday Discussions

Year:

1996

Language:

english

File:

PDF, 1.77 MB

english, 1996

45

The Parisi Formula has a Unique Minimizer

Auffinger, Antonio, Chen, Wei-Kuo

Journal:

Communications in Mathematical Physics

Year:

2015

Language:

english

File:

PDF, 261 KB

english, 2015

46

Binding of metals to purine N7 nitrogen atoms and implications for nucleic acids: A CSD survey

Leonarski, Filip, D’Ascenzo, Luigi, Auffinger, Pascal

Journal:

Inorganica Chimica Acta

Year:

2016

Language:

english

File:

PDF, 897 KB

english, 2016

47

A simplified proof of the relation between scaling exponents in first-passage percolation

Auffinger, Antonio, Damron, Michael

Journal:

The Annals of Probability

Year:

2014

Language:

english

File:

PDF, 201 KB

english, 2014

48

Mg 2+ ions: do they bind to nucleobase nitrogens?

Leonarski, Filip, D'Ascenzo, Luigi, Auffinger, Pascal

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 5.73 MB

english, 2017

49

Comment on “Evaluating Unexpectedly Short Non-covalent Distances in X-ray Crystal Structures of Proteins with Electronic Structure Analysis”

Kruse, Holger, Sponer, Jiri, Auffinger, Pascal

Journal:

Journal of Chemical Information and Modeling

Year:

2019

Language:

english

File:

PDF, 1.57 MB

english, 2019

50

[IEEE 2019 ACM/IEEE 22nd International Conference on Model Driven Engineering Languages and Systems (MODELS) - Munich, Germany (2019.9.15-2019.9.20)] 2019 ACM/IEEE 22nd International Conference on Model Driven Engineering Languages and Systems (MODELS) - Using Models to Enable Compliance Checking Against the GDPR: An Experience Report

Torre, Damiano, Soltana, Ghanem, Sabetzadeh, Mehrdad, Briand, Lionel C., Auffinger, Yuri, Goes, Peter

Year:

2019

File:

PDF, 383 KB

2019

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